Zahedi, Rene P: search on Z-Library

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1

PeptideShaker enables reanalysis of MS-derived proteomics data sets

Vaudel, Marc, Burkhart, Julia M, Zahedi, René P, Oveland, Eystein, Berven, Frode S, Sickmann, Albert, Martens, Lennart, Barsnes, Harald

Journal:

Nature Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

2

Highly Sensitive Phosphoproteomics by Tailoring Solid-Phase Extraction to Electrostatic Repulsion-Hydrophilic Interaction Chromatography

Loroch, Stefan, Zahedi, René Peiman, Sickmann, Albert

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 813 KB

english, 2015

3

PKA-RII subunit phosphorylation precedes activation by cAMP and regulates activity termination

Isensee, Jörg, Kaufholz, Melanie, Knape, Matthias J., Hasenauer, Jan, Hammerich, Hanna, Gonczarowska-Jorge, Humberto, Zahedi, René P., Schwede, Frank, Herberg, Friedrich W., Hucho, Tim

Journal:

The Journal of Cell Biology

Year:

2018

Language:

english

File:

PDF, 3.41 MB

english, 2018

4

Integration of polycarbonate membranes in microfluidic free-flow electrophoresis

Novo, Pedro, Dell'Aica, Margherita, Jender, Matthias, Hoeving, Stefan, Zahedi, Rene, Janasek, Dirk

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2017

Language:

english

File:

PDF, 25.87 MB

english, 2017

5

Phosphoproteome of Resting Human Platelets

Zahedi, René P., Lewandrowski, Urs, Wiesner, Julia, Wortelkamp, Stefanie, Moebius, Jan, Schütz, Claudia, Walter, Ulrich, Gambaryan, Stepan, Sickmann, Albert

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 609 KB

english, 2008

6

Global Analysis of the Mitochondrial N-Proteome Identifies a Processing Peptidase Critical for Protein Stability

F.-Nora Vögtle, Stefanie Wortelkamp, René P. Zahedi, Dorothea Becker, Claudia Leidhold, Kris Gevaert, Josef Kellermann, Wolfgang Voos, Albert Sickmann, Nikolaus Pfanner, Chris Meisinger

Journal:

Year:

2009

Language:

english

File:

PDF, 961 KB

english, 2009

7

Protease specificity profiling in a pipette tip using “charge-synchronized” proteome-derived peptide libraries

Nguyen, Minh T.N., Shema, Gerta, Zahedi, René P., Verhelst, Steven H.L.

Journal:

Journal of Proteome Research

Year:

2018

Language:

english

File:

PDF, 1.78 MB

english, 2018

8

Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry

Mnatsakanyan, Ruzanna, Shema, Gerta, Basik, Mark, Batist, Gerald, Borchers, Christoph H., Sickmann, Albert, Zahedi, René P.

Journal:

Expert Review of Proteomics

Year:

2018

Language:

english

File:

PDF, 2.28 MB

english, 2018

9

Subcellular Analysis of the Platelet Proteome

Premsler, Thomas, Lewandrowski, Urs, Peiman Zahedi, Rene, Sickmann, Albert

Journal:

Current Proteomics

Year:

2011

Language:

english

File:

PDF, 676 KB

english, 2011

10

The next level of complexity: Crosstalk of posttranslational modifications

Venne, A. Saskia, Kollipara, Laxmikanth, Zahedi, René P.

Journal:

Year:

2014

Language:

english

File:

PDF, 699 KB

english, 2014

11

The potential of fractional diagonal chromatography strategies for the enrichment of post-translational modifications

Venne, A. Saskia, Zahedi, René P.

Journal:

EuPA Open Proteomics

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

12

Combined quantification of the global proteome, phosphoproteome and proteolytic cleavage to characterize altered platelet functions in the human Scott syndrome

Solari, Fiorella A., Mattheij, Nadine J. A., Burkhart, Julia M., Swieringa, Frauke, Collins, Peter W., Cosemans, Judith M.E.M., Sickmann, Albert, Heemskerk, Johan W.M., Zahedi, Rene P.

Journal:

Molecular & Cellular Proteomics

Year:

2016

Language:

english

File:

PDF, 3.66 MB

english, 2016

13

Comparative proteomic analysis of biofilm and planktonic cells of Neisseria meningitidis

Tessa van Alen, Heike Claus, René P. Zahedi, Janos Groh, Heinrich Blazyca, Martin Lappann, Albert Sickmann, Ulrich Vogel

Journal:

Year:

2010

Language:

english

File:

PDF, 308 KB

english, 2010

14

An alternative NFAT-activation pathway mediated by IL-7 is critical for early thymocyte development

Patra, Amiya K, Avots, Andris, Zahedi, René P, Schüler, Thomas, Sickmann, Albert, Bommhardt, Ursula, Serfling, Edgar

Journal:

Nature Immunology

Year:

2012

Language:

english

File:

PDF, 1.81 MB

english, 2012

15

Why phosphoproteomics is still a challenge

Solari, Fiorella A., Dell'Aica, Margherita, Sickmann, Albert, Zahedi, René P.

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

16

High Temporal Resolution Study of Phosphorylation Events in HEK Cells Using a Micromixer Microfluidic Device

Novo, Pedro, Dell’Aica, Margherita, Janasek, Dirk, Zahedi, René P.

Journal:

Procedia Engineering

Year:

2016

Language:

english

File:

PDF, 615 KB

english, 2016

17

Human Platelet Protein Ubiquitylation and Changes following GPVI Activation

Unsworth, Amanda, Bombik, Izabela, Pinto-Fernandez, Adan, McGouran, Joanna, Konietzny, Rebecca, Zahedi, René, Watson, Steve, Kessler, Benedikt, Pears, Catherine

Journal:

Thrombosis and Haemostasis

Year:

2019

Language:

english

File:

PDF, 645 KB

english, 2019

18

Regulation of Mitochondrial Protein Import by Cytosolic Kinases

Oliver Schmidt, Angelika B. Harbauer, Sanjana Rao, Beate Eyrich, René P. Zahedi, Diana Stojanovski, Birgit Schönfisch, Bernard Guiard, Albert Sickmann, Nikolaus Pfanner, Chris Meisinger

Journal:

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

19

PARL mediates Smac proteolytic maturation in mitochondria to promote apoptosis

Saita, Shotaro, Nolte, Hendrik, Fiedler, Kai Uwe, Kashkar, Hamid, Venne, A. Saskia, Zahedi, René P., Krüger, Marcus, Langer, Thomas

Journal:

Nature Cell Biology

Year:

2017

Language:

english

File:

PDF, 22.89 MB

english, 2017

20

Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry

Sundberg, Mårten, Strage, Emma M., Bergquist, Jonas, Holst, Bodil S., Ramström, Margareta, Zahedi, René P.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

21

Characterizing circumgalactic gas around massive ellipticals at z ∼ 0.4 – I. Initial results★

Chen, Hsiao-Wen, Zahedy, Fakhri S, Johnson, Sean D, Pierce, Rebecca M, Huang, Yun-Hsin, Weiner, Benjamin J, Gauthier, Jean-René

Journal:

Monthly Notices of the Royal Astronomical Society

Year:

2018

Language:

english

File:

PDF, 4.27 MB

english, 2018

22

Impact of Digestion Conditions on Phosphoproteomics

Dickhut, Clarissa, Feldmann, Ingo, Lambert, Jörg, Zahedi, René P.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.11 MB

english, 2014

23

The Caveolin-3 G56S sequence variant of unknown significance: Muscle biopsy findings and functional cell biological analysis

Brauers, Eva, Roos, Andreas, Kollipara, Laxmikanth, Zahedi, René P., Beckmann, Alf, Mohanadas, Nilane, Bauer, Hartmut, Häusler, Martin, Thoma, Stéphanie, Kress, Wolfram, Senderek, Jan, Weis, Joachim

Journal:

PROTEOMICS - Clinical Applications

Year:

2016

Language:

english

File:

PDF, 847 KB

english, 2016

24

Effective assignment of α2,3/α2,6 sialic acid isomers in LC-MS/MS based glycoproteomics

Pett, Christian, Nasir, Waqas, Sihlbom, Carina, Olsson, Britt-Marie, Caixeta, Vanessa, Schorlemer, Manuel, Zahedi, Rene P, Larsson, Göran, Nilsson, Jonas, Westerlind, Ulrika

Journal:

Angewandte Chemie

Year:

2018

Language:

english

File:

PDF, 3.26 MB

english, 2018

25

High spatial and temporal resolution cell manipulation techniques in microchannels

Novo, Pedro, Dell'Aica, Margherita, Janasek, Dirk, Zahedi, René P.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2016

Language:

english

File:

PDF, 8.16 MB

english, 2016

26

An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana

Venne, A. Saskia, Solari, Fiorella A., Faden, Frederik, Paretti, Tomasso, Dissmeyer, Nico, Zahedi, René P.

Journal:

Year:

2015

Language:

english

File:

PDF, 832 KB

english, 2015

27

Omics-based responses induced by bosentan in human hepatoma HepaRG cell cultures

Rodrigues, Robim M., Kollipara, Laxmikanth, Chaudhari, Umesh, Sachinidis, Agapios, Zahedi, René P., Sickmann, Albert, Kopp-Schneider, Annette, Jiang, Xiaoqi, Keun, Hector, Hengstler, Jan, Oorts, Marli

Journal:

Archives of Toxicology

Year:

2018

Language:

english

File:

PDF, 4.29 MB

english, 2018

28

Phosphoproteomics of human platelets: A quest for novel activation pathways

René P. Zahedi, Antonija J. Begonja, Stepan Gambaryan, Albert Sickmann

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 590 KB

english, 2006

29

Two-dimensional benzyldimethyl-n-hexadecylammonium chloride/SDS-PAGE for membrane proteomics

René-Peiman Zahedi, Chris Meisinger, Albert Sickmann

Journal:

Year:

2005

Language:

english

File:

PDF, 350 KB

english, 2005

30

A Complex Standard for Protein Identification, Designed by Evolution

Vaudel, Marc, Burkhart, Julia M., Breiter, Daniela, Zahedi, René P., Sickmann, Albert, Martens, Lennart

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 300 KB

english, 2012

31

Proteome profiling and ultrastructural characterization of the human RCMH cell line: myoblastic properties and suitability for myopathological studies

Kollipara, Laxmikanth, Buchkremer, Stephan, Weis, Joachim, Brauers, Eva, Hoss, Mareike, Rütten, Stephan, Caviedes, Pablo, Zahedi, René Peiman, Roos, Andreas

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 4.73 MB

english, 2016

32

Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro

Fíla, Jan, Radau, Sonja, Matros, Andrea, Hartmann, Anja, Scholz, Uwe, Feciková, Jana, Mock, Hans-Peter, Čapková, Věra, Zahedi, René Peiman, Honys, David

Journal:

Molecular & Cellular Proteomics

Year:

2016

Language:

english

File:

PDF, 4.12 MB

english, 2016

33

Omics-based in vitro verification of an adverse outcome pathway of cholestatic liver injury

Rodrigues, Robim M., Kollipara, Laxmikanth, Chaudhari, Umesh, Sachinidis, Agapios, Zahedi, René P., Sickmann, Albert, Kopp-Schneider, Annette, Jiang, Xiaoqi, Keun, Hector, Hengstler, Jan, Vanhalewyn,

Journal:

Toxicology Letters

Year:

2017

Language:

english

File:

PDF, 94 KB

english, 2017

34

Simple, scalable and ultra-sensitive tip-based identification of protease substrates

Shema, Gerta, Nguyen, Minh T. N., Solari, Fiorella Andrea, Loroch, Stefan, Venne, A Saskia, Kollipara, Laxmikanth, Sickmann, Albert, Verhelst, Steven HL, Zahedi, René P.

Journal:

Molecular & Cellular Proteomics

Year:

2018

Language:

english

File:

PDF, 797 KB

english, 2018

35

Targeted and Untargeted Proteomics Approaches in Biomarker Development

Sobsey, Constance A., Ibrahim, Sahar, Richard, Vincent R., Gaspar, Vanessa, Mitsa, Georgia, Lacasse, Vincent, Zahedi, René P., Batist, Gerald, Borchers, Christoph H.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.31 MB

english, 2019

36

Homologous desensitization of guanylyl cyclase A, the receptor for atrial natriuretic peptide, is associated with a complex phosphorylation pattern

Juliane Schröter, René P. Zahedi, Michael Hartmann, Birgit Gaßner, Alexandra Gazinski, Jens Waschke, Albert Sickmann, Michaela Kuhn

Journal:

Year:

2010

Language:

english

File:

PDF, 531 KB

english, 2010

37

Proteomic insights into non-small cell lung cancer: New ideas for cancer diagnosis and therapy from a functional viewpoint

Linxweiler, Johannes, Kollipara, Laxmikanth, Zahedi, René P., Lampel, Pavel, Zimmermann, Richard, Greiner, Markus

Journal:

EuPA Open Proteomics

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

38

D-score: A search engine independent MD-score

Vaudel, Marc, Breiter, Daniela, Beck, Florian, Rahnenführer, Jörg, Martens, Lennart, Zahedi, René P.

Journal:

Year:

2013

Language:

english

File:

PDF, 715 KB

english, 2013

39

Mass-Spectrometry based protein analytics to unravel the tissue pathophysiology in Duchenne Muscular Dystrophy

Carr, Stephanie J., Zahedi, René P., Lochmüller, Hanns, Roos, Andreas

Journal:

PROTEOMICS - Clinical Applications

Year:

2017

Language:

english

File:

PDF, 901 KB

english, 2017

40

The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides

Florian Beck, Urs Lewandrowski, Matthias Wiltfang, Ingo Feldmann, Jörg Geiger, Albert Sickmann, René Peiman Zahedi

Journal:

Year:

2011

Language:

english

File:

PDF, 355 KB

english, 2011

41

Cytomegalovirus Downregulates IRE1 to Repress the Unfolded Protein Response

Stahl, Sebastian, Burkhart, Julia M., Hinte, Florian, Tirosh, Boaz, Mohr, Hermine, Zahedi, René P., Sickmann, Albert, Ruzsics, Zsolt, Budt, Matthias, Brune, Wolfram, Mohr, Ian

Journal:

Year:

2013

Language:

english

File:

PDF, 6.07 MB

english, 2013

42

Free Flow Electrophoresis Separation of Proteins and DNA Using Microfluidics and Polycarbonate Membranes

Novo, Pedro, Jender, Matthias, Dell’Aica, Margherita, Zahedi, René P., Janasek, Dirk

Journal:

Procedia Engineering

Year:

2016

Language:

english

File:

PDF, 512 KB

english, 2016

43

Biochemical and pathological changes result from mutated Caveolin-3 in muscle

González Coraspe, José Andrés, Weis, Joachim, Anderson, Mary E., Münchberg, Ute, Lorenz, Kristina, Buchkremer, Stephan, Carr, Stephanie, Zahedi, René Peiman, Brauers, Eva, Michels, Hannah, Sunada, Yos

Journal:

Skeletal Muscle

Year:

2018

Language:

english

File:

PDF, 3.57 MB

english, 2018

44

Integral Quantification Accuracy Estimation for Reporter Ion-based Quantitative Proteomics (iQuARI)

Vaudel, Marc, Burkhart, Julia M., Radau, Sonja, Zahedi, René P., Martens, Lennart, Sickmann, Albert

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

45

Effects of the NO/soluble guanylate cyclase/cGMP system on the functions of human platelets

Makhoul, Stephanie, Walter, Elena, Pagel, Oliver, Walter, Ulrich, Sickmann, Albert, Gambaryan, Stepan, Smolenski, Albert, Zahedi, René P., Jurk, Kerstin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.40 MB

english, 2018

46

Peptide identification quality control

Marc Vaudel, Julia M. Burkhart, Albert Sickmann, Lennart Martens, René P. Zahedi

Journal:

Year:

2011

Language:

english

File:

PDF, 342 KB

english, 2011

47

Analysis of Post-translational Modifications

Zahedi, René, Sickmann, Albert

Journal:

Year:

2013

Language:

english

File:

PDF, 532 KB

english, 2013

48

Biological pathways modulated by antipsychotics in the blood plasma of schizophrenia patients and their association to a clinical response

Martins-de-Souza, Daniel, Solari, Fiorella A, Guest, Paul C, Zahedi, René P, Steiner, Johann

Journal:

npj Schizophrenia

Year:

2015

Language:

english

File:

PDF, 794 KB

english, 2015

49

Using two peptide isotopologues as internal standards for the streamlined quantification of low-abundance proteins by immuno-MRM and immuno-MALDI

Ibrahim, Sahar, Froehlich, Bjoern, Aguilar-Mahecha, Adriana, Aloyz, Raquel, Poetz, Oliver, Basik, Mark, Batist, Gerald, Zahedi, Rene P., Borchers, Christoph H

Journal:

Analytical Chemistry

Year:

2020

File:

PDF, 816 KB

2020

50

Nuclear envelopes from amphibian oocytes — from morphology to protein inventory

Ulrich Scheer, Marie-Christine Dabauvalle, Georg Krohne, René Peiman Zahedi, Albert Sickmann

Journal:

European Journal of Cell Biology

Year:

2005

Language:

english

File:

PDF, 1.10 MB

english, 2005

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